SVMTrainingOptions (BioFSharp.Mz) | BioFSharp.Mz

BioFSharp.Mz

SVMTrainingOptions Type

Namespace: BioFSharp.Mz
Assembly: BioFSharp.Mz.dll
Parent Module: Parameters
Base Type: obj
All Interfaces: IEquatable<SVMTrainingOptions> , IStructuralEquatable , IComparable<SVMTrainingOptions> , IComparable , IStructuralComparable

Union cases

Union case	Description
`Cneg float` Full Usage: `Cneg float` Parameters: Item : `float`	Cneg, penalty for mistakes made on negative examples. Set by cross validation if not specified or if -p is not specified Item : `float`
`Cpos float` Full Usage: `Cpos float` Parameters: Item : `float`	Cpos, penalty for mistakes made on positive examples. Set by cross validation if not specified. Item : `float`
`FDR_CrossValidation float` Full Usage: `FDR_CrossValidation float` Parameters: Item : `float`	False discovery rate threshold for evaluating best cross validation result and reported end result. Default = 0.01. Item : `float`
`FDR_PositiveExamples float` Full Usage: `FDR_PositiveExamples float` Parameters: Item : `float`	False discovery rate threshold to define positive examples in training. Set to testFDR if 0. Default = 0.01. Item : `float`
`MaxIterations int` Full Usage: `MaxIterations int` Parameters: Item : `int`	Maximal number of iterations Item : `int`
`QuickValidation` Full Usage: `QuickValidation`	Quicker execution by reduced internal cross-validation.
`ReportPerfomanceAfterIteration` Full Usage: `ReportPerfomanceAfterIteration`	Report performance on test set each iteration.
`SeedRndNumberGenerator float` Full Usage: `SeedRndNumberGenerator float` Parameters: Item : `float`	Set seed of the random number generator. Default = 1 Item : `float`
`SubsetTraining float` Full Usage: `SubsetTraining float` Parameters: Item : `float`	Only train an SVM on a subset of PSMs, and use the resulting score vector to evaluate the other PSMs. Recommended when analyzing huge numbers (>1 million) of PSMs. When set to 0, all PSMs are used for training as normal. Default = 0. Item : `float`

Instance members

Instance member	Description
`this.IsCneg` Full Usage: `this.IsCneg` Returns: `bool`	Returns: `bool`
`this.IsCpos` Full Usage: `this.IsCpos` Returns: `bool`	Returns: `bool`
`this.IsFDR_CrossValidation` Full Usage: `this.IsFDR_CrossValidation` Returns: `bool`	Returns: `bool`
`this.IsFDR_PositiveExamples` Full Usage: `this.IsFDR_PositiveExamples` Returns: `bool`	Returns: `bool`
`this.IsMaxIterations` Full Usage: `this.IsMaxIterations` Returns: `bool`	Returns: `bool`
`this.IsQuickValidation` Full Usage: `this.IsQuickValidation` Returns: `bool`	Returns: `bool`
`this.IsReportPerfomanceAfterIteration` Full Usage: `this.IsReportPerfomanceAfterIteration` Returns: `bool`	Returns: `bool`
`this.IsSeedRndNumberGenerator` Full Usage: `this.IsSeedRndNumberGenerator` Returns: `bool`	Returns: `bool`
`this.IsSubsetTraining` Full Usage: `this.IsSubsetTraining` Returns: `bool`	Returns: `bool`