ModCombinator (BioFSharp.Mz) | BioFSharp.Mz

BioFSharp.Mz

ModCombinator Module

Namespace: BioFSharp.Mz
Assembly: BioFSharp.Mz.dll
Parent Module: SearchDB

Types

Type	Description
AminoAcidWithFlag	Flag indicates if potential modification is fixed
ModLookUp
ModLookUpFunc	Type abreviation

Functions and values

Function or value	Description
`ToModStringBy xModLookUp aa` Full Usage: `ToModStringBy xModLookUp aa` Parameters: xModLookUp : `string -> string option` aa : `AminoAcid` Returns: `string`	Returns a ModString representation. xModLookUp : `string -> string option` aa : `AminoAcid` Returns: `string`
`addProteinTerminalModifications minPos maxPos modLookUp digPep` Full Usage: `addProteinTerminalModifications minPos maxPos modLookUp digPep` Parameters: minPos : `int` maxPos : `int` modLookUp : `ModLookUp` digPep : `DigestedPeptide<'a>` Returns: `DigestedPeptide<'a> list`	minPos : `int` maxPos : `int` modLookUp : `ModLookUp` digPep : `DigestedPeptide<'a>` Returns: `DigestedPeptide<'a> list`
`combine modLookUp threshold massfunction seqfunction state aal` Full Usage: `combine modLookUp threshold massfunction seqfunction state aal` Parameters: modLookUp : `ModLookUp` threshold : `int` massfunction : `IBioItem -> float` seqfunction : `string -> AminoAcid -> string` state : `'a` aal : `AminoAcid list` Returns: `PeptideWithFeature<string, float> list`	Returns a list of all possible modified petide sequences and its masses according to the given modification-lookUp. It uses the given bioitem -> mass function and a function to aggregate the sequence. modLookUp : `ModLookUp` threshold : `int` massfunction : `IBioItem -> float` seqfunction : `string -> AminoAcid -> string` state : `'a` aal : `AminoAcid list` Returns: `PeptideWithFeature<string, float> list`
`combineToModString modLookUp threshold massfunction aal` Full Usage: `combineToModString modLookUp threshold massfunction aal` Parameters: modLookUp : `ModLookUp` threshold : `int` massfunction : `IBioItem -> float` aal : `AminoAcid list` Returns: `PeptideWithFeature<string, float> list`	Returns a list of all possible modified petide sequences and its masses according to the given modification-lookUp. The peptide sequence representation is ModString. modLookUp : `ModLookUp` threshold : `int` massfunction : `IBioItem -> float` aal : `AminoAcid list` Returns: `PeptideWithFeature<string, float> list`
`convertSearchModification aminoAcids searchModification` Full Usage: `convertSearchModification aminoAcids searchModification` Parameters: aminoAcids : `AminoAcid list` searchModification : `SearchModification` Returns: `(AminoAcid * Modification) list`	Returns a list of all possible modified AminoAcids given the particular Searchmodification aminoAcids : `AminoAcid list` searchModification : `SearchModification` Returns: `(AminoAcid * Modification) list`
`getModSequencesOf peptideId modLookUp threshold massfunction digPeps` Full Usage: `getModSequencesOf peptideId modLookUp threshold massfunction digPeps` Parameters: peptideId : `int ref` modLookUp : `ModLookUp` threshold : `int` massfunction : `IBioItem -> float` digPeps : `DigestedPeptide<'a>[]` Returns: `PeptideContainer[]`	peptideId : `int ref` modLookUp : `ModLookUp` threshold : `int` massfunction : `IBioItem -> float` digPeps : `DigestedPeptide<'a>[]` Returns: `PeptideContainer[]`
`isVarModified a` Full Usage: `isVarModified a` Parameters: a : `AminoAcidWithFlag` Returns: `bool`	a : `AminoAcidWithFlag` Returns: `bool`
`mapModLocation loc` Full Usage: `mapModLocation loc` Parameters: loc : `ModLocation` Returns: `ModLocation`	loc : `ModLocation` Returns: `ModLocation`
`modLookUpOf dbParams` Full Usage: `modLookUpOf dbParams` Parameters: dbParams : `SearchDbParams` Returns: `ModLookUp`	Returns the ModLookup according to given SearchDbParams dbParams : `SearchDbParams` Returns: `ModLookUp`
`setFixModByLookUp modLookUpFunc aa` Full Usage: `setFixModByLookUp modLookUpFunc aa` Parameters: modLookUpFunc : `ModLookUpFunc` aa : `AminoAcidWithFlag` Returns: `AminoAcidWithFlag`	Returns modified or unmodified AminoAcid depending on the matching expression in a AminoAcidWithFlag struct The boolean value "false" is used to state that the Modification is fixed modLookUpFunc : `ModLookUpFunc` aa : `AminoAcidWithFlag` Returns: `AminoAcidWithFlag`
`setFixedModifiedFlagOf a` Full Usage: `setFixedModifiedFlagOf a` Parameters: a : `AminoAcid` Returns: `AminoAcidWithFlag`	a : `AminoAcid` Returns: `AminoAcidWithFlag`
`setVarModByLookUp modLookUpFunc aa` Full Usage: `setVarModByLookUp modLookUpFunc aa` Parameters: modLookUpFunc : `ModLookUpFunc` aa : `AminoAcidWithFlag` Returns: `AminoAcidWithFlag list`	Returns modified or unmodified AminoAcid depending on the matching expression in a AminoAcidWithFlag struct The boolean value "false" is used to state that the Modification is fixed modLookUpFunc : `ModLookUpFunc` aa : `AminoAcidWithFlag` Returns: `AminoAcidWithFlag list`
`setVarModifiedFlagOf a` Full Usage: `setVarModifiedFlagOf a` Parameters: a : `AminoAcid` Returns: `AminoAcidWithFlag`	a : `AminoAcid` Returns: `AminoAcidWithFlag`