XScoring (BioFSharp.Mz) | BioFSharp.Mz

BioFSharp.Mz

XScoring Module

Namespace: BioFSharp.Mz
Assembly: BioFSharp.Mz.dll

Types

Type	Description
CountedMatches
MatchingScore
RatedPeak

Functions and values

Function or value	Description
`calcAndromedaAndXTandemScore (arg1, arg2) (arg3, arg4) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz theoreticalSpectra spectrumID` Full Usage: `calcAndromedaAndXTandemScore (arg1, arg2) (arg3, arg4) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz theoreticalSpectra spectrumID` Parameters: arg0 : `int` arg1 : `int` arg2 : `float` arg3 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` theoreticalSpectra : `TheoreticalSpectrum<PeakFamily<TaggedPeak>[]> list` spectrumID : `string` Returns: `SearchEngineResult<float> list * SearchEngineResult<float> list`	Calculates the AndromedaLike scores for all theoretical spectra. arg0 : `int` arg1 : `int` arg2 : `float` arg3 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` theoreticalSpectra : `TheoreticalSpectrum<PeakFamily<TaggedPeak>[]> list` spectrumID : `string` Returns: `SearchEngineResult<float> list * SearchEngineResult<float> list`
`calcHyperScore countedMatches` Full Usage: `calcHyperScore countedMatches` Parameters: countedMatches : `CountedMatches` Returns: `float`	Calculates the X!TandemHyperScore countedMatches : `CountedMatches` Returns: `float`
`createCountedMatches q n_BIons n_YIons n_Neutral k_BIons k_YIons k_Neutral matchedSum` Full Usage: `createCountedMatches q n_BIons n_YIons n_Neutral k_BIons k_YIons k_Neutral matchedSum` Parameters: q : `int` n_BIons : `int` n_YIons : `int` n_Neutral : `int` k_BIons : `int` k_YIons : `int` k_Neutral : `int` matchedSum : `float` Returns: `CountedMatches`	q : `int` n_BIons : `int` n_YIons : `int` n_Neutral : `int` k_BIons : `int` k_YIons : `int` k_Neutral : `int` matchedSum : `float` Returns: `CountedMatches`
`createMatchingScore score n k q` Full Usage: `createMatchingScore score n k q` Parameters: score : `float` n : `int` k : `int` q : `int` Returns: `MatchingScore`	score : `float` n : `int` k : `int` q : `int` Returns: `MatchingScore`
`createRatedPeak (arg1, arg2) moreIntensePeaks` Full Usage: `createRatedPeak (arg1, arg2) moreIntensePeaks` Parameters: arg0 : `float` arg1 : `float` moreIntensePeaks : `int` Returns: `RatedPeak`	arg0 : `float` arg1 : `float` moreIntensePeaks : `int` Returns: `RatedPeak`
`findMaxIterator qMostAbundandPepsMin countArrayL rPeak` Full Usage: `findMaxIterator qMostAbundandPepsMin countArrayL rPeak` Parameters: qMostAbundandPepsMin : `int` countArrayL : `int` rPeak : `RatedPeak` Returns: `int`	qMostAbundandPepsMin : `int` countArrayL : `int` rPeak : `RatedPeak` Returns: `int`
`getIntensity rPeak` Full Usage: `getIntensity rPeak` Parameters: rPeak : `RatedPeak` Returns: `float`	rPeak : `RatedPeak` Returns: `float`
`getTheoSpecs (arg1, arg2) chargeState possiblePeptideInfos` Full Usage: `getTheoSpecs (arg1, arg2) chargeState possiblePeptideInfos` Parameters: arg0 : `float` arg1 : `float` chargeState : `int` possiblePeptideInfos : `(LookUpResult<AminoAcid> * FragmentMasses) list` Returns: `TheoreticalSpectrum<PeakFamily<TaggedPeak> array> list`	Converts the fragment ion ladders to a theoretical Sequestlike spectrum at a given charge state. Subsequently, the spectrum is binned to the nearest mz bin (binwidth = 1 Da). Filters out peaks that are not within the scanLimits. arg0 : `float` arg1 : `float` chargeState : `int` possiblePeptideInfos : `(LookUpResult<AminoAcid> * FragmentMasses) list` Returns: `TheoreticalSpectrum<PeakFamily<TaggedPeak> array> list`
`optimizeAndromedaScore precursorMZ countedMatches` Full Usage: `optimizeAndromedaScore precursorMZ countedMatches` Parameters: precursorMZ : `float` countedMatches : `CountedMatches` Returns: `MatchingScore`	precursorMZ : `float` countedMatches : `CountedMatches` Returns: `MatchingScore`
`predictOf (lowerScanLimit, upperScanLimit) chargeState fragments` Full Usage: `predictOf (lowerScanLimit, upperScanLimit) chargeState fragments` Parameters: lowerScanLimit : `'a` upperScanLimit : `'b` chargeState : `float` fragments : `PeakFamily<TaggedMass> list` Returns: `PeakFamily<TaggedPeak> array`	Converts the fragmentIon ladder to a theoretical spectrum at a given charge state. Filters out all theoretical peaks, that lie outside the given lower and upperScanLimits. lowerScanLimit : `'a` upperScanLimit : `'b` chargeState : `float` fragments : `PeakFamily<TaggedMass> list` Returns: `PeakFamily<TaggedPeak> array`
`raiseCountsAndHits qMostAbundandPepsMin countArray theoPeak rPeak` Full Usage: `raiseCountsAndHits qMostAbundandPepsMin countArray theoPeak rPeak` Parameters: qMostAbundandPepsMin : `int` countArray : `CountedMatches[]` theoPeak : `TaggedPeak` rPeak : `RatedPeak`	qMostAbundandPepsMin : `int` countArray : `CountedMatches[]` theoPeak : `TaggedPeak` rPeak : `RatedPeak`
`raiseOnlyCounts countArray theoPeak` Full Usage: `raiseOnlyCounts countArray theoPeak` Parameters: countArray : `CountedMatches[]` theoPeak : `TaggedPeak`	countArray : `CountedMatches[]` theoPeak : `TaggedPeak`