FastqItem<'SequenceItem, 'QualitySequenceItem> (BioFSharp) | BioFSharp

FastqItem<'SequenceItem, 'QualitySequenceItem> Type

Namespace: BioFSharp.FileFormats
Assembly: BioFSharp.dll
Parent Module: Fastq
Base Type: obj
All Interfaces: IEquatable<FastqItem<'SequenceItem, 'QualitySequenceItem>> , IStructuralEquatable

FastqItem record contains header, sequence, qualityheader, qualitysequence of one entry

Record fields

Record Field	Description
`Header` Full Usage: `Header` Field type: `string`	Field type: `string`
`QualityHeader` Full Usage: `QualityHeader` Field type: `string`	Field type: `string`
`QualitySequence` Full Usage: `QualitySequence` Field type: `'QualitySequenceItem seq`	Field type: `'QualitySequenceItem seq`
`Sequence` Full Usage: `Sequence` Field type: `'SequenceItem seq`	Field type: `'SequenceItem seq`

Static members

Static member	Description
`FastqItem.create header sequence qualityHeader qualitySequence` Full Usage: `FastqItem.create header sequence qualityHeader qualitySequence` Parameters: header : `string` sequence : `'a` qualityHeader : `string` qualitySequence : `'b` Returns: `FastqItem<'SequenceItem0, 'QualitySequenceItem1>` Modifiers: inline	Creates FastqItem with header line, sequence, qualityHeader and qualitySequence header : `string` sequence : `'a` qualityHeader : `string` qualitySequence : `'b` Returns: `FastqItem<'SequenceItem0, 'QualitySequenceItem1>`
`FastqItem.toLines sequenceItemConverter qualitySequenceItemConverter fsq` Full Usage: `FastqItem.toLines sequenceItemConverter qualitySequenceItemConverter fsq` Parameters: sequenceItemConverter : `'SequenceItem -> char` - A function to convert sequence items to characters qualitySequenceItemConverter : `'QualitySequenceItem -> char` fsq : `FastqItem<'SequenceItem, 'QualitySequenceItem>` Returns: `string seq`	Converts the FastaItem to a sequence of lines. The header line is prefixed with '>' and the sequence is split into chunks of 80 characters. sequenceItemConverter : `'SequenceItem -> char` A function to convert sequence items to characters qualitySequenceItemConverter : `'QualitySequenceItem -> char` fsq : `FastqItem<'SequenceItem, 'QualitySequenceItem>` Returns: `string seq`
`FastqItem.toString sequenceItemConverter qualitySequenceItemConverter fsq` Full Usage: `FastqItem.toString sequenceItemConverter qualitySequenceItemConverter fsq` Parameters: sequenceItemConverter : `'SequenceItem -> char` - A function to convert sequence items to characters qualitySequenceItemConverter : `'QualitySequenceItem -> char` fsq : `FastqItem<'SequenceItem, 'QualitySequenceItem>` Returns: `string`	Converts the FastaItem to a string. The header line is prefixed with '>' and the sequence is split into chunks of 80 characters per line. sequenceItemConverter : `'SequenceItem -> char` A function to convert sequence items to characters qualitySequenceItemConverter : `'QualitySequenceItem -> char` fsq : `FastqItem<'SequenceItem, 'QualitySequenceItem>` Returns: `string`