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Clustal Module

Contains functions for reading clustal alignment files

Functions and values

Function or value Description

read path

Full Usage: read path

Parameters:
    path : string

Returns: Alignment<TaggedSequence<string, char>, AlignmentInfo>

Reads clustal File (W or Omega) of given path and creates an alignment out of it. Also reads in numbers at end of line. Those have to be filtered out afterwards if not needed.

path : string
Returns: Alignment<TaggedSequence<string, char>, AlignmentInfo>

write path alignment

Full Usage: write path alignment

Parameters:

Writes an alignment to given path in clustal format. Overwrites file if it already exists

path : string
alignment : Alignment<TaggedSequence<string, char>, AlignmentInfo>

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