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Obo Module

Functions and values

Function or value Description

parseDBXref v

Full Usage: parseDBXref v

Parameters:
    v : string

Returns: DBXref
v : string
Returns: DBXref

parseSynonym scopeFromDeprecatedTag line v

Full Usage: parseSynonym scopeFromDeprecatedTag line v

Parameters:
Returns: TermSynonym
scopeFromDeprecatedTag : TermSynonymScope option
line : int
v : string
Returns: TermSynonym

readTermLines verbose input

Full Usage: readTermLines verbose input

Parameters:
    verbose : bool - If true, prints warnings for unknown tags.
    input : string seq - The input sequence of strings representing the lines of the OBO flat file.

Returns: OboTerm seq

Parses a OBO flat file and returns a sequence of OboTerm terms. Note that all other stanzas are ignored.

verbose : bool

If true, prints warnings for unknown tags.

input : string seq

The input sequence of strings representing the lines of the OBO flat file.

Returns: OboTerm seq

readTerms verbose filePath

Full Usage: readTerms verbose filePath

Parameters:
    verbose : bool
    filePath : string

Returns: OboTerm seq
verbose : bool
filePath : string
Returns: OboTerm seq

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